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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13780 and 13781 are separated by 550 nucleotides
13781 and 13782 are separated by 122 nucleotides
13782 and 13783 are separated by 1067 nucleotides
13783 and 13784 are separated by 1849 nucleotides
mRNA_5412: 13780 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 41,309 to 43,272
13780
mRNA_5413: 13781 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 43,823 to 46,039
13781
mRNA_5414: 13782 - HMMPfam-Glycosyl transferase family 2-PF13704, at 46,162 to 47,875
13782
mRNA_5415: 13783 - HMMPfam-Tyrosyl-DNA phosphodiesterase-PF06087,SUPERFAMILY--SSF56024, at 48,943 to 50,652
13783
mRNA_5416: 13784 - K04496 CTBP C-terminal binding protein, at 52,502 to 53,852
13784
Group
Condition
mRNA
_5412
mRNA
_5413
mRNA
_5414
mRNA
_5415
mRNA
_5416
13780
13781
13782
13783
13784
growth on ypd
YPD
+0.1
+0.1
-0.0
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.2
+0.1
-0.5
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
-0.5
+0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
-0.1
-0.2
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
+0.2
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.2
+0.1
-0.1
-0.1
auxotrophy
Dropout Complete
-0.2
+0.0
-0.0
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.1
-0.3
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.0
+0.0
+0.1
auxotrophy
YNB Glucose
-0.0
+0.1
-0.1
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
-0.4
+0.0
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.0
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.2
+0.1
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
-0.1
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.1
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.0
+0.0
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.0
-0.1
+0.1
+0.2
growth on oleic acid
YNB Glucose
-0.1
+0.2
-0.3
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
-0.2
+0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.2
+0.3
-0.1
+0.9
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