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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13781 and 13782 are separated by 122 nucleotides
13782 and 13783 are separated by 1067 nucleotides
13783 and 13784 are separated by 1849 nucleotides
13784 and 13785 are separated by 145 nucleotides
mRNA_5413: 13781 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 43,823 to 46,039
13781
mRNA_5414: 13782 - HMMPfam-Glycosyl transferase family 2-PF13704, at 46,162 to 47,875
13782
mRNA_5415: 13783 - HMMPfam-Tyrosyl-DNA phosphodiesterase-PF06087,SUPERFAMILY--SSF56024, at 48,943 to 50,652
13783
mRNA_5416: 13784 - K04496 CTBP C-terminal binding protein, at 52,502 to 53,852
13784
mRNA_5417: 13785 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 53,998 to 56,725
13785
Group
Condition
mRNA
_5413
mRNA
_5414
mRNA
_5415
mRNA
_5416
mRNA
_5417
13781
13782
13783
13784
13785
growth on ypd
YPD
+0.1
-0.0
-0.5
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
+0.1
+0.2
-0.4
auxotrophy
YNB Glucose
+0.1
-0.1
+0.1
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
-0.5
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
+0.0
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
-0.2
+0.4
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.5
+0.2
+0.2
+0.0
auxotrophy
Dropout Complete
+0.0
-0.0
+0.1
+0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
-0.0
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
+0.2
-0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.0
+0.1
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
+0.1
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.4
+0.0
+0.6
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.1
-0.1
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
+0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.1
+0.1
-0.0
+0.2
growth on oleic acid
YNB Glucose
+0.2
-0.3
+0.3
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
+0.3
+0.2
-0.2
growth on ricinoleic acid
YNB Glucose
+0.0
+0.0
+0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
+0.0
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.3
-0.1
+0.9
+0.4
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