Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13782 and 13783 are separated by 1067 nucleotides13783 and 13784 are separated by 1849 nucleotides13784 and 13785 are separated by 145 nucleotides13785 and 13786 are separated by 193 nucleotides mRNA_5414: 13782 - HMMPfam-Glycosyl transferase family 2-PF13704, at 46,162 to 47,875 13782 mRNA_5415: 13783 - HMMPfam-Tyrosyl-DNA phosphodiesterase-PF06087,SUPERFAMILY--SSF56024, at 48,943 to 50,652 13783 mRNA_5416: 13784 - K04496 CTBP C-terminal binding protein, at 52,502 to 53,852 13784 mRNA_5417: 13785 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 53,998 to 56,725 13785 mRNA_5418: 13786 - K01502 E3.5.5.7 aliphatic nitrilase, at 56,919 to 58,432 13786
Group Condition mRNA_5414 mRNA_5415 mRNA_5416 mRNA_5417 mRNA_5418
13782 13783 13784 13785 13786
growth on ypd YPD -0.0 -0.5 -0.2 -0.1 -0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 -0.5 -0.2 +0.1 +0.0
auxotrophy YNB Glucose -0.1 +0.1 +0.1 -0.4 +0.1
auxotrophy YNB Glucose 75mM Arginine -0.3 +0.1 +0.2 -0.4 +0.2
ypd buoyancy 40 hrs Low Buoyancy -0.0 +0.0 +0.1 -0.1 +0.0
growth on oleic acid YNB Oleic Acid -0.5 +0.2 +0.2 +0.0 +0.1
auxotrophy Dropout Complete -0.0 +0.1 +0.0 -0.1 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 -0.1 -0.1 +0.2 -0.0
ypd buoyancy 40 hrs High Buoyancy -0.2 +0.1 +0.1 +0.1 -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.1 -0.2 +0.4 +0.0 -0.0
facs on lipid accumulation Sorted High BODIPY Gate +0.2 -0.0 +0.0 +0.1 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.1 +0.2 +0.1 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 +0.2 -0.0 +0.0 +0.1
auxotrophy YNB Glucose 75mM Methionine -0.2 +0.3 +0.2 -0.2 +0.0
growth on ricinoleic acid YNB Methylricinoleic Acid +0.0 +0.1 +0.1 +0.1 +0.1
growth on oleic acid YNB Glucose -0.3 +0.3 +0.3 -0.1 +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 +0.1 -0.0 +0.2 +0.3
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 +0.0 +0.1 +0.1 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 +0.0 +0.6 +0.2 +0.1
growth on ricinoleic acid YNB Glucose +0.0 +0.2 +0.1 +0.1 +0.3
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 -0.1 +0.9 +0.4 -0.3
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