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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13785 and 13786 are separated by 193 nucleotides
13786 and 13787 are separated by 305 nucleotides
13787 and 13788 are separated by 350 nucleotides
13788 and 13789 are separated by 449 nucleotides
mRNA_5417: 13785 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 53,998 to 56,725
13785
mRNA_5418: 13786 - K01502 E3.5.5.7 aliphatic nitrilase, at 56,919 to 58,432
13786
mRNA_5419: 13787 - Interpro Cut8, nuclear proteasome tether protein, at 58,738 to 60,106
13787
mRNA_5420: 13788 - Hypothetical Protein, at 60,457 to 62,427
13788
mRNA_5421: 13789 - Interpro Domain of unknown function (DUF5102) 0, at 62,877 to 64,571
13789
Group
Condition
mRNA
_5417
mRNA
_5418
mRNA
_5419
mRNA
_5420
mRNA
_5421
13785
13786
13787
13788
13789
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.2
-0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.3
-0.2
+0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.1
-0.0
+0.0
-0.1
growth on ypd
YPD
-0.1
-0.0
+0.2
+0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.2
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.1
+0.1
+0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.0
+0.2
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
+0.5
+0.0
-0.1
auxotrophy
YNB Glucose
-0.4
+0.1
+0.3
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.2
+0.5
-0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
+0.4
+0.1
+0.4
auxotrophy
Dropout Complete
-0.1
+0.1
+0.5
-0.2
+0.7
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.9
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.1
-0.1
+0.4
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
+0.6
-0.2
+0.7
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
+1.0
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
+0.3
-0.1
+1.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
+0.4
+0.2
+1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
+0.4
+0.0
+1.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.0
+0.4
+0.4
+1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.3
+0.5
+0.4
+1.2
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