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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13787 and 13788 are separated by 350 nucleotides
13788 and 13789 are separated by 449 nucleotides
13789 and 13790 are separated by 250 nucleotides
13790 and 13791 are separated by 183 nucleotides
mRNA_5419: 13787 - Interpro Cut8, nuclear proteasome tether protein, at 58,738 to 60,106
13787
mRNA_5420: 13788 - Hypothetical Protein, at 60,457 to 62,427
13788
mRNA_5421: 13789 - Interpro Domain of unknown function (DUF5102) 0, at 62,877 to 64,571
13789
mRNA_5422: 13790 - HMMPfam-Domain of unknown function (DUF336)-PF03928,SUPERFAMILY--SSF143744, at 64,822 to 65,544
13790
mRNA_5423: 13791 - K01426 E3.5.1.4, amiE amidase, at 65,728 to 67,986
13791
Group
Condition
mRNA
_5419
mRNA
_5420
mRNA
_5421
mRNA
_5422
mRNA
_5423
13787
13788
13789
13790
13791
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
-0.5
-0.6
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.2
-0.3
-0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.1
-0.2
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
-0.1
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.2
-0.4
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.0
-0.1
+0.2
+0.1
growth on ypd
YPD
+0.2
+0.1
-0.3
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.0
+0.3
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.0
-0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.2
+0.7
-0.5
+0.1
auxotrophy
YNB Glucose
+0.3
-0.1
+0.4
+0.2
-0.1
auxotrophy
Dropout Complete
+0.5
-0.2
+0.7
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.1
+0.4
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.4
+0.7
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
-0.1
+1.2
+0.0
-0.0
growth on oleic acid
YNB Glucose
+0.9
+0.0
+0.2
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+1.0
+0.2
+0.2
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.0
+1.3
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.2
+1.0
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.4
+1.2
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.4
+1.2
+0.2
+0.0
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