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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13789 and 13790 are separated by 250 nucleotides
13790 and 13791 are separated by 183 nucleotides
13791 and 13792 are separated by 481 nucleotides
13792 and 13793 are separated by 146 nucleotides
mRNA_5421: 13789 - Interpro Domain of unknown function (DUF5102) 0, at 62,877 to 64,571
13789
mRNA_5422: 13790 - HMMPfam-Domain of unknown function (DUF336)-PF03928,SUPERFAMILY--SSF143744, at 64,822 to 65,544
13790
mRNA_5423: 13791 - K01426 E3.5.1.4, amiE amidase, at 65,728 to 67,986
13791
mRNA_5424: 13792 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 68,468 to 70,424
13792
mRNA_5425: 13793 - K12735 PPIL4 peptidyl-prolyl cis-trans isomerase-like 4, at 70,571 to 72,264
13793
Group
Condition
mRNA
_5421
mRNA
_5422
mRNA
_5423
mRNA
_5424
mRNA
_5425
13789
13790
13791
13792
13793
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.6
+0.1
-0.0
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.2
+0.1
+0.4
-1.7
growth on ypd
YPD
-0.3
+0.2
+0.1
-0.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
+0.1
+0.0
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.0
+0.1
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
+0.2
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.2
+0.1
+0.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.1
-0.0
+0.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
+0.0
-0.0
+0.5
auxotrophy
YNB Glucose
+0.4
+0.2
-0.1
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
+0.1
+0.5
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.2
-0.1
-0.0
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.0
+0.1
+0.0
-0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.0
+0.2
-0.1
+0.3
auxotrophy
Dropout Complete
+0.7
+0.1
-0.2
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.2
+0.2
+0.0
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
+0.1
+0.2
+0.0
-0.0
growth on oleic acid
YNB Glucose
+0.2
+0.1
+0.2
-0.1
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
-0.5
+0.1
+0.4
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.3
-0.2
-0.1
-0.1
+0.6
growth on ricinoleic acid
YNB Glucose
+1.2
+0.0
-0.0
+0.2
+0.4
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