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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13790 and 13791 are separated by 183 nucleotides
13791 and 13792 are separated by 481 nucleotides
13792 and 13793 are separated by 146 nucleotides
13793 and 13794 are separated by 463 nucleotides
mRNA_5422: 13790 - HMMPfam-Domain of unknown function (DUF336)-PF03928,SUPERFAMILY--SSF143744, at 64,822 to 65,544
13790
mRNA_5423: 13791 - K01426 E3.5.1.4, amiE amidase, at 65,728 to 67,986
13791
mRNA_5424: 13792 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 68,468 to 70,424
13792
mRNA_5425: 13793 - K12735 PPIL4 peptidyl-prolyl cis-trans isomerase-like 4, at 70,571 to 72,264
13793
mRNA_5426: 13794 - K06944 K06944 uncharacterized protein, at 72,728 to 74,932
13794
Group
Condition
mRNA
_5422
mRNA
_5423
mRNA
_5424
mRNA
_5425
mRNA
_5426
13790
13791
13792
13793
13794
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.1
+0.4
-1.7
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
-0.4
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.1
-0.0
-0.2
+0.2
growth on ypd
YPD
+0.2
+0.1
-0.3
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.0
+0.1
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
-0.1
-0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
+0.0
-0.2
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
-0.2
-0.1
-0.1
auxotrophy
YNB Glucose
+0.2
-0.1
-0.0
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.0
-0.3
-0.0
auxotrophy
Dropout Complete
+0.1
-0.2
+0.1
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.2
-0.1
+0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-0.1
+0.6
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
-0.1
+0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
-0.0
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
+0.0
-0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.1
+0.5
-0.3
-0.0
growth on ricinoleic acid
YNB Glucose
+0.0
-0.0
+0.2
+0.4
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.1
+0.4
+0.6
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
+0.2
+0.4
-0.0
growth on oleic acid
YNB Glucose
+0.1
+0.2
-0.1
+0.6
-0.1
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