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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13797 and 13798 are separated by 230 nucleotides
13798 and 13799 are separated by 164 nucleotides
13799 and 13800 are separated by 704 nucleotides
13800 and 13801 are separated by 642 nucleotides
mRNA_5429: 13797 - K01067 E3.1.2.1, ACH1 acetyl-CoA hydrolase, at 79,557 to 82,396
13797
mRNA_5430: 13798 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 82,627 to 84,263
13798
mRNA_5431: 13799 - KOG1296 Uncharacterized conserved protein, at 84,428 to 85,305
13799
mRNA_5432: 13800 - Hypothetical Protein, at 86,010 to 86,874
13800
mRNA_5433: 13801 - BLAST UPF0658 Golgi apparatus membrane protein [Termitomyce..., at 87,517 to 89,164
13801
Group
Condition
mRNA
_5429
mRNA
_5430
mRNA
_5431
mRNA
_5432
mRNA
_5433
13797
13798
13799
13800
13801
auxotrophy
Dropout Complete
-0.0
-0.7
+0.1
-0.6
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.1
-0.5
-0.4
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.0
-0.1
-0.9
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.0
-0.1
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.3
-0.1
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.2
-0.3
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
-0.2
-0.2
-0.1
auxotrophy
YNB Glucose
-0.1
-0.3
+0.2
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.4
+0.4
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
-0.3
-0.1
+0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.0
-0.1
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.1
+0.1
-0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.1
+0.1
+0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
+0.3
-0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.0
+0.5
-0.6
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
+0.3
+0.1
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.7
-0.2
-0.0
+0.1
growth on ypd
YPD
-0.2
-0.4
+0.2
+1.0
-0.3
growth on oleic acid
YNB Glucose
+0.1
+0.3
+0.3
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.4
-0.0
+0.6
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.1
+0.3
+0.8
-0.2
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