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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13798 and 13799 are separated by 164 nucleotides
13799 and 13800 are separated by 704 nucleotides
13800 and 13801 are separated by 642 nucleotides
13801 and 13802 are separated by 194 nucleotides
mRNA_5430: 13798 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 82,627 to 84,263
13798
mRNA_5431: 13799 - KOG1296 Uncharacterized conserved protein, at 84,428 to 85,305
13799
mRNA_5432: 13800 - Hypothetical Protein, at 86,010 to 86,874
13800
mRNA_5433: 13801 - BLAST UPF0658 Golgi apparatus membrane protein [Termitomyce..., at 87,517 to 89,164
13801
mRNA_5434: 13802 - KOG2852 Possible oxidoreductase, at 89,359 to 90,914
13802
Group
Condition
mRNA
_5430
mRNA
_5431
mRNA
_5432
mRNA
_5433
mRNA
_5434
13798
13799
13800
13801
13802
auxotrophy
Dropout Complete
-0.7
+0.1
-0.6
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.5
-0.4
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.1
-0.9
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
-0.3
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
+0.0
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.3
+0.2
-0.2
-0.4
auxotrophy
YNB Glucose
-0.3
+0.2
-0.1
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.2
-0.2
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.4
-0.2
-0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.5
-0.6
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
-0.1
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
-0.3
-0.1
+0.3
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.1
-0.1
-0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.4
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
-0.3
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
-0.2
+0.2
+0.3
growth on oleic acid
YNB Glucose
+0.3
+0.3
-0.2
+0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.7
-0.2
-0.0
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
+0.8
-0.2
+0.1
growth on ypd
YPD
-0.4
+0.2
+1.0
-0.3
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.0
+0.6
+0.1
+0.3
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