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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13800 and 13801 are separated by 642 nucleotides
13801 and 13802 are separated by 194 nucleotides
13802 and 13803 are separated by 117 nucleotides
13803 and 13804 are separated by 1264 nucleotides
mRNA_5432: 13800 - Hypothetical Protein, at 86,010 to 86,874
13800
mRNA_5433: 13801 - BLAST UPF0658 Golgi apparatus membrane protein [Termitomyce..., at 87,517 to 89,164
13801
mRNA_5434: 13802 - KOG2852 Possible oxidoreductase, at 89,359 to 90,914
13802
mRNA_5435: 13803 - Hypothetical Protein, at 91,032 to 92,817
13803
mRNA_5436: 13804 - Hypothetical Protein, at 94,082 to 95,346
13804
Group
Condition
mRNA
_5432
mRNA
_5433
mRNA
_5434
mRNA
_5435
mRNA
_5436
13800
13801
13802
13803
13804
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
-0.4
+0.0
-1.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.2
-0.0
+0.3
-1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.2
-0.2
+0.0
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.1
+0.0
+0.0
-1.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
+0.1
+0.1
-0.7
auxotrophy
YNB Glucose
-0.1
-0.1
-0.2
+0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
+0.3
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.3
-0.2
+0.1
-0.1
auxotrophy
Dropout Complete
-0.6
-0.1
-0.2
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
+0.0
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.1
-0.2
+0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-0.1
+0.2
+0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.0
+0.1
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
-0.0
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
-0.2
+0.1
+0.5
-1.0
growth on ricinoleic acid
YNB Glucose
+0.3
-0.2
+0.2
+0.3
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.1
+0.1
+0.3
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
+0.2
+0.3
+0.3
+0.1
growth on oleic acid
YNB Glucose
-0.2
+0.0
+0.3
+0.3
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.6
+0.1
+0.3
+0.2
+0.3
growth on ypd
YPD
+1.0
-0.3
+0.5
-0.0
+1.7
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