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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13801 and 13802 are separated by 194 nucleotides
13802 and 13803 are separated by 117 nucleotides
13803 and 13804 are separated by 1264 nucleotides
13804 and 13805 are separated by 2 nucleotides
mRNA_5433: 13801 - BLAST UPF0658 Golgi apparatus membrane protein [Termitomyce..., at 87,517 to 89,164
13801
mRNA_5434: 13802 - KOG2852 Possible oxidoreductase, at 89,359 to 90,914
13802
mRNA_5435: 13803 - Hypothetical Protein, at 91,032 to 92,817
13803
mRNA_5436: 13804 - Hypothetical Protein, at 94,082 to 95,346
13804
mRNA_5437: 13805 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 95,349 to 95,702
13805
Group
Condition
mRNA
_5433
mRNA
_5434
mRNA
_5435
mRNA
_5436
mRNA
_5437
13801
13802
13803
13804
13805
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.4
+0.0
-1.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.0
+0.0
-1.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.2
+0.0
-0.7
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.0
+0.3
-1.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
+0.1
-0.7
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.1
+0.5
-1.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
-0.1
-0.6
N.D.
auxotrophy
YNB Glucose
-0.1
-0.2
+0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.0
+0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
+0.3
-0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.1
+0.2
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
+0.1
+0.3
N.D.
auxotrophy
Dropout Complete
-0.1
-0.2
+0.1
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.0
+0.1
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.3
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
+0.1
+0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
+0.2
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.3
+0.3
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.0
+0.3
+0.3
+0.6
N.D.
growth on ypd
YPD
-0.3
+0.5
-0.0
+1.7
N.D.
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