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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13808 and 13809 are separated by 208 nucleotides
13809 and 13810 are separated by 847 nucleotides
13810 and 13811 are separated by 144 nucleotides
13811 and 13812 are separated by 188 nucleotides
mRNA_5440: 13808 - Hypothetical Protein, at 101,462 to 101,965
13808
mRNA_5441: 13809 - Hypothetical Protein, at 102,174 to 103,025
13809
mRNA_5442: 13810 - HMMPfam-R3H domain-PF01424,HMMPfam-SUZ domain-PF12752,ProSiteProfiles-R3H domain profile.-PS51061,ProSiteProfiles-SUZ domain profile.-PS51673,SUPERFAMILY--SSF82708, at 103,873 to 106,982
13810
mRNA_5443: 13811 - KOG3085 Predicted hydrolase (HAD superfamily), at 107,127 to 108,436
13811
mRNA_5444: 13812 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 108,625 to 109,612
13812
Group
Condition
mRNA
_5440
mRNA
_5441
mRNA
_5442
mRNA
_5443
mRNA
_5444
13808
13809
13810
13811
13812
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
-2.3
-0.3
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.5
-1.9
+0.1
+0.0
auxotrophy
Dropout Complete
N.D.
+0.1
-1.8
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.8
-1.3
-0.2
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
-1.3
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
-1.4
-0.1
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
-0.8
-0.2
+0.4
growth on ypd
YPD
N.D.
+0.2
-0.6
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.7
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
-0.3
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
-1.2
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
-0.0
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
-0.1
+0.1
-0.3
auxotrophy
YNB Glucose
N.D.
+0.8
-1.0
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.5
+0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.2
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
-0.4
-0.1
+0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
-0.5
+0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
+0.3
-0.2
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.2
+0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.5
+1.3
+0.4
+0.1
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