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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13811 and 13812 are separated by 188 nucleotides
13812 and 13813 are separated by 1088 nucleotides
13813 and 13814 are separated by 649 nucleotides
13814 and 13815 are separated by 30 nucleotides
mRNA_5443: 13811 - KOG3085 Predicted hydrolase (HAD superfamily), at 107,127 to 108,436
13811
mRNA_5444: 13812 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 108,625 to 109,612
13812
mRNA_5445: 13813 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 110,701 to 112,520
13813
mRNA_5446: 13814 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 113,170 to 113,689
13814
mRNA_5447: 13815 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 113,720 to 116,134
13815
Group
Condition
mRNA
_5443
mRNA
_5444
mRNA
_5445
mRNA
_5446
mRNA
_5447
13811
13812
13813
13814
13815
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
-2.5
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.6
-1.7
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.4
-1.6
N.D.
-0.1
auxotrophy
Dropout Complete
-0.1
+0.1
-0.3
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose
+0.0
-0.1
-0.1
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
-0.4
N.D.
-0.2
growth on ypd
YPD
-0.2
-0.1
+0.2
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.3
-0.3
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.4
-0.2
N.D.
+0.8
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.1
-0.2
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.4
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
-0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.5
-0.2
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.1
+0.3
-0.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
-0.2
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
-0.0
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
+0.0
N.D.
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.6
+0.1
N.D.
+0.0
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