Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 13811 and 13812 are separated by 188 nucleotides13812 and 13813 are separated by 1088 nucleotides13813 and 13814 are separated by 649 nucleotides13814 and 13815 are separated by 30 nucleotides mRNA_5443: 13811 - KOG3085 Predicted hydrolase (HAD superfamily), at 107,127 to 108,436 13811 mRNA_5444: 13812 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 108,625 to 109,612 13812 mRNA_5445: 13813 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 110,701 to 112,520 13813 mRNA_5446: 13814 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 113,170 to 113,689 13814 mRNA_5447: 13815 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 113,720 to 116,134 13815
Group Condition mRNA_5443 mRNA_5444 mRNA_5445 mRNA_5446 mRNA_5447
13811 13812 13813 13814 13815
growth on oleic acid YNB Oleic Acid +0.2 +0.2 -2.5 N.D. +0.3
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 +0.6 -1.7 N.D. -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 +0.4 -1.6 N.D. -0.1
auxotrophy Dropout Complete -0.1 +0.1 -0.3 N.D. -0.2
ypd buoyancy 40 hrs Median Buoyancy -0.2 -0.1 -0.1 N.D. -0.1
auxotrophy YNB Glucose +0.0 -0.1 -0.1 N.D. -0.2
auxotrophy YNB Glucose 75mM Arginine +0.2 +0.1 -0.4 N.D. -0.2
growth on ypd YPD -0.2 -0.1 +0.2 N.D. -0.1
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.3 -0.3 N.D. +0.1
ypd buoyancy 40 hrs High Buoyancy -0.2 +0.1 +0.1 N.D. -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 -0.4 -0.2 N.D. +0.8
ypd buoyancy 40 hrs No Buoyancy Separation +0.4 +0.1 -0.2 N.D. -0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.1 +0.0 -0.1 N.D. +0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 +0.4 -0.1 N.D. +0.1
auxotrophy YNB Glucose 75mM Methionine +0.3 +0.2 -0.2 N.D. -0.1
growth on ricinoleic acid YNB Glucose -0.1 +0.5 -0.2 N.D. +0.1
growth on oleic acid YNB Glucose +0.1 +0.3 -0.3 N.D. +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 -0.1 -0.2 N.D. +0.7
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 -0.3 -0.0 N.D. +0.7
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 -0.2 +0.0 N.D. +0.6
facs on lipid accumulation Sorted High BODIPY Gate -0.2 +0.6 +0.1 N.D. +0.0
remove
mRNA_5443
plot
remove
mRNA_5444
plot
remove
mRNA_5445
remove
mRNA_5446
plot
remove
mRNA_5447
plot