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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13812 and 13813 are separated by 1088 nucleotides
13813 and 13814 are separated by 649 nucleotides
13814 and 13815 are separated by 30 nucleotides
13815 and 13816 are separated by 479 nucleotides
mRNA_5444: 13812 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 108,625 to 109,612
13812
mRNA_5445: 13813 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 110,701 to 112,520
13813
mRNA_5446: 13814 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 113,170 to 113,689
13814
mRNA_5447: 13815 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 113,720 to 116,134
13815
mRNA_5448: 13816 - BLAST GQ67_01206T0 [Komagataella phaffii], at 116,614 to 117,202
13816
Group
Condition
mRNA
_5444
mRNA
_5445
mRNA
_5446
mRNA
_5447
mRNA
_5448
13812
13813
13814
13815
13816
growth on oleic acid
YNB Oleic Acid
+0.2
-2.5
N.D.
+0.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-1.7
N.D.
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-1.6
N.D.
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.4
N.D.
-0.2
-0.2
auxotrophy
YNB Glucose
-0.1
-0.1
N.D.
-0.2
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.2
N.D.
-0.1
-0.2
auxotrophy
Dropout Complete
+0.1
-0.3
N.D.
-0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
N.D.
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.3
N.D.
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.1
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
N.D.
-0.1
-0.0
growth on ypd
YPD
-0.1
+0.2
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.2
N.D.
+0.8
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.0
N.D.
+0.6
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
N.D.
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.1
N.D.
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
N.D.
+0.7
-0.2
growth on oleic acid
YNB Glucose
+0.3
-0.3
N.D.
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.0
N.D.
+0.7
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.1
N.D.
+0.0
-0.5
growth on ricinoleic acid
YNB Glucose
+0.5
-0.2
N.D.
+0.1
+0.1
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