Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 13812 and 13813 are separated by 1088 nucleotides13813 and 13814 are separated by 649 nucleotides13814 and 13815 are separated by 30 nucleotides13815 and 13816 are separated by 479 nucleotides mRNA_5444: 13812 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 108,625 to 109,612 13812 mRNA_5445: 13813 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 110,701 to 112,520 13813 mRNA_5446: 13814 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 113,170 to 113,689 13814 mRNA_5447: 13815 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 113,720 to 116,134 13815 mRNA_5448: 13816 - BLAST GQ67_01206T0 [Komagataella phaffii], at 116,614 to 117,202 13816
Group Condition mRNA_5444 mRNA_5445 mRNA_5446 mRNA_5447 mRNA_5448
13812 13813 13814 13815 13816
growth on oleic acid YNB Oleic Acid +0.2 -2.5 N.D. +0.3 -0.0
growth on ricinoleic acid YNB Ricinoleic Acid +0.6 -1.7 N.D. -0.2 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.4 -1.6 N.D. -0.1 +0.1
auxotrophy YNB Glucose 75mM Arginine +0.1 -0.4 N.D. -0.2 -0.2
auxotrophy YNB Glucose -0.1 -0.1 N.D. -0.2 +0.0
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 -0.2 N.D. -0.1 -0.2
auxotrophy Dropout Complete +0.1 -0.3 N.D. -0.2 +0.0
ypd buoyancy 40 hrs Median Buoyancy -0.1 -0.1 N.D. -0.1 +0.2
ypd buoyancy 40 hrs Low Buoyancy +0.3 -0.3 N.D. +0.1 -0.2
facs on lipid accumulation Sorted No BODIPY Gate +0.0 -0.1 N.D. +0.1 -0.1
auxotrophy YNB Glucose 75mM Methionine +0.2 -0.2 N.D. -0.1 -0.0
growth on ypd YPD -0.1 +0.2 N.D. -0.1 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.4 -0.2 N.D. +0.8 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 +0.0 N.D. +0.6 -0.4
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.1 N.D. -0.1 +0.0
facs on lipid accumulation Sorted Low BODIPY Gate +0.4 -0.1 N.D. +0.1 -0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 -0.2 N.D. +0.7 -0.2
growth on oleic acid YNB Glucose +0.3 -0.3 N.D. +0.2 -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 -0.0 N.D. +0.7 -0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.6 +0.1 N.D. +0.0 -0.5
growth on ricinoleic acid YNB Glucose +0.5 -0.2 N.D. +0.1 +0.1
remove
mRNA_5444
plot
remove
mRNA_5445
plot
remove
mRNA_5446
remove
mRNA_5447
plot
remove
mRNA_5448
plot