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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13813 and 13814 are separated by 649 nucleotides
13814 and 13815 are separated by 30 nucleotides
13815 and 13816 are separated by 479 nucleotides
13816 and 13817 are separated by 206 nucleotides
mRNA_5445: 13813 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 110,701 to 112,520
13813
mRNA_5446: 13814 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 113,170 to 113,689
13814
mRNA_5447: 13815 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 113,720 to 116,134
13815
mRNA_5448: 13816 - BLAST GQ67_01206T0 [Komagataella phaffii], at 116,614 to 117,202
13816
mRNA_5449: 13817 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 117,409 to 118,509
13817
Group
Condition
mRNA
_5445
mRNA
_5446
mRNA
_5447
mRNA
_5448
mRNA
_5449
13813
13814
13815
13816
13817
growth on oleic acid
YNB Oleic Acid
-2.5
N.D.
+0.3
-0.0
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.7
N.D.
-0.2
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.6
N.D.
-0.1
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
N.D.
-0.2
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
+0.1
-0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.1
-0.2
-0.1
auxotrophy
Dropout Complete
-0.3
N.D.
-0.2
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.1
-0.0
-0.1
auxotrophy
YNB Glucose
-0.1
N.D.
-0.2
+0.0
-0.0
growth on ypd
YPD
+0.2
N.D.
-0.1
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
+0.0
-0.5
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.1
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
+0.7
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
+0.1
+0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
+0.1
-0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
+0.1
-0.3
+0.3
growth on oleic acid
YNB Glucose
-0.3
N.D.
+0.2
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
+0.6
-0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.1
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
+0.8
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
+0.7
-0.1
+0.2
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