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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13814 and 13815 are separated by 30 nucleotides
13815 and 13816 are separated by 479 nucleotides
13816 and 13817 are separated by 206 nucleotides
13817 and 13818 are separated by 314 nucleotides
mRNA_5446: 13814 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 113,170 to 113,689
13814
mRNA_5447: 13815 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 113,720 to 116,134
13815
mRNA_5448: 13816 - BLAST GQ67_01206T0 [Komagataella phaffii], at 116,614 to 117,202
13816
mRNA_5449: 13817 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 117,409 to 118,509
13817
mRNA_5450: 13818 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 118,824 to 121,253
13818
Group
Condition
mRNA
_5446
mRNA
_5447
mRNA
_5448
mRNA
_5449
mRNA
_5450
13814
13815
13816
13817
13818
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
-0.2
-0.3
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
-0.2
+0.1
-0.2
auxotrophy
Dropout Complete
N.D.
-0.2
+0.0
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.0
-0.1
-0.2
auxotrophy
YNB Glucose
N.D.
-0.2
+0.0
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
-0.5
+0.2
-0.1
growth on ypd
YPD
N.D.
-0.1
-0.1
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.1
+0.0
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.1
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.2
-0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.2
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.6
-0.4
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
-0.3
+0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
+0.1
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.7
-0.2
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.0
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.1
+0.3
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
-0.0
+0.3
-0.2
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.0
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.7
-0.1
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.8
-0.2
+0.1
-0.1
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