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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13815 and 13816 are separated by 479 nucleotides
13816 and 13817 are separated by 206 nucleotides
13817 and 13818 are separated by 314 nucleotides
13818 and 13819 are separated by 1187 nucleotides
mRNA_5447: 13815 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 113,720 to 116,134
13815
mRNA_5448: 13816 - BLAST GQ67_01206T0 [Komagataella phaffii], at 116,614 to 117,202
13816
mRNA_5449: 13817 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 117,409 to 118,509
13817
mRNA_5450: 13818 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 118,824 to 121,253
13818
mRNA_5451: 13819 - Hypothetical Protein, at 122,441 to 123,785
13819
Group
Condition
mRNA
_5447
mRNA
_5448
mRNA
_5449
mRNA
_5450
mRNA
_5451
13815
13816
13817
13818
13819
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
-0.3
-0.4
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
+0.1
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
-0.1
-0.2
-0.2
auxotrophy
Dropout Complete
-0.2
+0.0
-0.0
-0.2
-0.1
auxotrophy
YNB Glucose
-0.2
+0.0
-0.0
-0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.5
+0.2
-0.1
+0.1
growth on ypd
YPD
-0.1
-0.1
-0.2
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.4
-0.1
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
-0.0
-0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.2
-0.1
+0.4
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
+0.1
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.1
+0.2
-0.0
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
+0.0
-0.4
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.3
+0.3
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-0.2
-0.3
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.0
+0.3
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
+0.3
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
+0.2
+0.1
+0.1
growth on oleic acid
YNB Glucose
+0.2
-0.0
+0.3
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
-0.1
+0.2
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
-0.2
+0.1
-0.1
+0.2
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