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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13817 and 13818 are separated by 314 nucleotides
13818 and 13819 are separated by 1187 nucleotides
13819 and 13820 are separated by 486 nucleotides
13820 and 13821 are separated by 787 nucleotides
mRNA_5449: 13817 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 117,409 to 118,509
13817
mRNA_5450: 13818 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 118,824 to 121,253
13818
mRNA_5451: 13819 - Hypothetical Protein, at 122,441 to 123,785
13819
mRNA_5452: 13820 - HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630, at 124,272 to 125,754
13820
mRNA_5453: 13821 - HMMPfam-Glutaredoxin-like domain (DUF836)-PF05768,SUPERFAMILY--SSF52833, at 126,542 to 126,978
13821
Group
Condition
mRNA
_5449
mRNA
_5450
mRNA
_5451
mRNA
_5452
mRNA
_5453
13817
13818
13819
13820
13821
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.4
+0.0
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.1
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-0.0
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.4
+0.0
-0.3
N.D.
growth on ypd
YPD
-0.2
+0.1
+0.0
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.2
-0.2
+0.3
N.D.
auxotrophy
Dropout Complete
-0.0
-0.2
-0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
+0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
+0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
-0.4
+0.2
+0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.2
+0.1
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
-0.2
-0.1
+0.3
N.D.
auxotrophy
YNB Glucose
-0.0
-0.1
+0.0
+0.5
N.D.
growth on oleic acid
YNB Glucose
+0.3
+0.0
-0.0
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
+0.1
+0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
+0.1
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.0
+0.1
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
+0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.0
+0.0
+0.7
N.D.
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