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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13818 and 13819 are separated by 1187 nucleotides
13819 and 13820 are separated by 486 nucleotides
13820 and 13821 are separated by 787 nucleotides
13821 and 13822 are separated by 166 nucleotides
mRNA_5450: 13818 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 118,824 to 121,253
13818
mRNA_5451: 13819 - Hypothetical Protein, at 122,441 to 123,785
13819
mRNA_5452: 13820 - HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630, at 124,272 to 125,754
13820
mRNA_5453: 13821 - HMMPfam-Glutaredoxin-like domain (DUF836)-PF05768,SUPERFAMILY--SSF52833, at 126,542 to 126,978
13821
mRNA_5454: 13822 - KOG2673 Uncharacterized conserved protein, contains PSP domain, at 127,145 to 127,753
13822
Group
Condition
mRNA
_5450
mRNA
_5451
mRNA
_5452
mRNA
_5453
mRNA
_5454
13818
13819
13820
13821
13822
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.1
N.D.
-1.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.1
N.D.
-1.1
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.0
+0.2
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
+0.2
N.D.
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.0
-0.3
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
+0.2
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
-0.0
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.4
+0.2
+0.4
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
+0.2
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
+0.3
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
+0.1
N.D.
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
+0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
+0.3
N.D.
+0.3
growth on oleic acid
YNB Glucose
+0.0
-0.0
+0.2
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
+0.0
N.D.
+0.3
growth on ypd
YPD
+0.1
+0.0
+0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.1
+0.4
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.0
+0.7
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.1
+0.1
N.D.
+0.4
auxotrophy
Dropout Complete
-0.2
-0.1
+0.4
N.D.
+0.7
auxotrophy
YNB Glucose
-0.1
+0.0
+0.5
N.D.
+0.9
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