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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13822 and 13823 are separated by 63 nucleotides
13823 and 13824 are separated by 978 nucleotides
13824 and 13825 are separated by 2095 nucleotides
13825 and 13826 are separated by 753 nucleotides
mRNA_5454: 13822 - KOG2673 Uncharacterized conserved protein, contains PSP domain, at 127,145 to 127,753
13822
mRNA_5455: 13823 - PRINTS-Proline rich extensin signature-PR01217, at 127,817 to 128,320
13823
mRNA_5456: 13824 - K07034 K07034 uncharacterized protein, at 129,299 to 130,839
13824
mRNA_5457: 13825 - KOG2533 Permease of the major facilitator superfamily, at 132,935 to 135,021
13825
mRNA_5458: 13826 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 135,775 to 137,466
13826
Group
Condition
mRNA
_5454
mRNA
_5455
mRNA
_5456
mRNA
_5457
mRNA
_5458
13822
13823
13824
13825
13826
ypd buoyancy
40 hrs Median Buoyancy
-1.0
N.D.
+0.2
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
-1.1
N.D.
+0.3
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.5
N.D.
+0.4
-0.5
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
N.D.
-1.4
+0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
N.D.
+1.2
-0.9
-0.1
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
-0.2
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
-0.4
N.D.
-0.4
+0.1
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-0.2
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
N.D.
+0.4
-0.3
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.0
-0.5
+0.7
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.0
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
-0.5
+0.1
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
+0.6
-0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
-0.1
+0.3
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.5
N.D.
-0.1
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
+0.1
+0.0
+0.9
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
-0.0
+0.2
+0.4
growth on ypd
YPD
+0.1
N.D.
-0.3
+0.4
+0.6
auxotrophy
Dropout Complete
+0.7
N.D.
-0.1
+0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
+0.2
+0.4
+0.3
auxotrophy
YNB Glucose
+0.9
N.D.
+0.2
-0.1
+0.7
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