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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13828 and 13829 are separated by 562 nucleotides
13829 and 13830 are separated by 331 nucleotides
13830 and 13831 are separated by 550 nucleotides
13831 and 13832 are separated by 953 nucleotides
mRNA_5460: 13828 - Hypothetical Protein, at 142,761 to 144,304
13828
mRNA_5461: 13829 - KOG1721 FOG Zn-finger, at 144,867 to 148,106
13829
mRNA_5462: 13830 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 148,438 to 149,863
13830
mRNA_5463: 13831 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 150,414 to 154,047
13831
mRNA_5464: 13832 - K09579 PIN4 peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, at 155,001 to 155,781
13832
Group
Condition
mRNA
_5460
mRNA
_5461
mRNA
_5462
mRNA
_5463
mRNA
_5464
13828
13829
13830
13831
13832
growth on ricinoleic acid
YNB Glucose
-1.0
+0.2
+0.3
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.0
-0.1
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
-0.0
+0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.0
+0.1
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
-0.3
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.0
+0.2
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.0
-0.2
+0.2
N.D.
growth on ypd
YPD
-0.0
-0.0
+0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.0
-0.0
+0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.1
+0.0
+0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
+0.6
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
+0.1
+0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.1
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.0
+0.1
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+0.2
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
+0.1
+0.1
N.D.
auxotrophy
Dropout Complete
+0.6
+0.1
-0.0
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.9
+0.2
+0.0
-0.3
N.D.
auxotrophy
YNB Glucose
+0.8
+0.2
+0.3
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+1.0
+0.2
+0.1
-0.3
N.D.
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