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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13830 and 13831 are separated by 550 nucleotides
13831 and 13832 are separated by 953 nucleotides
13832 and 13833 are separated by 407 nucleotides
13833 and 13834 are separated by 203 nucleotides
mRNA_5462: 13830 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 148,438 to 149,863
13830
mRNA_5463: 13831 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 150,414 to 154,047
13831
mRNA_5464: 13832 - K09579 PIN4 peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, at 155,001 to 155,781
13832
mRNA_5465: 13833 - Hypothetical Protein, at 156,189 to 157,604
13833
mRNA_5466: 13834 - K05841 E2.4.1.173 sterol 3beta-glucosyltransferase, at 157,808 to 163,476
13834
Group
Condition
mRNA
_5462
mRNA
_5463
mRNA
_5464
mRNA
_5465
mRNA
_5466
13830
13831
13832
13833
13834
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.0
N.D.
-0.5
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.3
N.D.
-0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
N.D.
-0.3
+0.2
auxotrophy
Dropout Complete
-0.0
-0.1
N.D.
+0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
N.D.
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.3
N.D.
+0.5
-0.9
auxotrophy
YNB Glucose
+0.3
-0.3
N.D.
+0.1
-0.0
growth on ricinoleic acid
YNB Glucose
+0.3
-0.2
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.4
N.D.
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
N.D.
+0.6
-0.5
growth on ypd
YPD
+0.1
+0.0
N.D.
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.2
N.D.
+0.4
+0.1
growth on oleic acid
YNB Glucose
+0.1
-0.0
N.D.
+0.5
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
N.D.
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
N.D.
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
N.D.
+0.6
-0.4
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
N.D.
+0.9
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
N.D.
+0.8
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
+0.8
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
-0.1
N.D.
+1.4
+0.2
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