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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13833 and 13834 are separated by 203 nucleotides
13834 and 13835 are separated by 1639 nucleotides
13835 and 13836 are separated by 5 nucleotides
13836 and 13837 are separated by 104 nucleotides
mRNA_5465: 13833 - Hypothetical Protein, at 156,189 to 157,604
13833
mRNA_5466: 13834 - K05841 E2.4.1.173 sterol 3beta-glucosyltransferase, at 157,808 to 163,476
13834
mRNA_5467: 13835 - KOG4391 Predicted alpha/beta hydrolase BEM46, at 165,116 to 166,451
13835
mRNA_5468: 13836 - Hypothetical Protein, at 166,457 to 167,011
13836
mRNA_5469: 13837 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins retinal binding site.-PS00327,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 167,116 to 168,617
13837
Group
Condition
mRNA
_5465
mRNA
_5466
mRNA
_5467
mRNA
_5468
mRNA
_5469
13833
13834
13835
13836
13837
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.9
-0.4
+0.2
-0.5
auxotrophy
Dropout Complete
+0.0
-0.2
-0.4
-0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
-0.5
+0.0
-0.2
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.4
-0.3
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.2
+0.2
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
+0.0
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
-0.0
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.2
+0.2
-0.1
-0.3
auxotrophy
YNB Glucose
+0.1
-0.0
+0.2
-0.0
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.4
-0.4
-0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.0
-0.1
+0.3
-0.1
growth on ypd
YPD
-0.0
+0.1
+0.1
+0.1
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
+0.4
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.1
+0.1
+0.0
-0.3
growth on oleic acid
YNB Glucose
+0.5
+0.0
+0.2
-0.0
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
+0.3
+0.3
-0.4
growth on oleic acid
YNB Oleic Acid
+0.9
-0.0
-0.3
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.5
-0.1
-0.1
+0.0
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.8
+0.0
-0.4
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.8
+0.0
-0.0
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+1.4
+0.2
+0.1
-0.3
+0.3
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