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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13835 and 13836 are separated by 5 nucleotides
13836 and 13837 are separated by 104 nucleotides
13837 and 13838 are separated by 220 nucleotides
13838 and 13839 are separated by 516 nucleotides
mRNA_5467: 13835 - KOG4391 Predicted alpha/beta hydrolase BEM46, at 165,116 to 166,451
13835
mRNA_5468: 13836 - Hypothetical Protein, at 166,457 to 167,011
13836
mRNA_5469: 13837 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins retinal binding site.-PS00327,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 167,116 to 168,617
13837
mRNA_5470: 13838 - K00599 METTL6 methyltransferase-like protein 6, at 168,838 to 170,246
13838
mRNA_5471: 13839 - KOG4696 Uncharacterized conserved protein, at 170,763 to 172,785
13839
Group
Condition
mRNA
_5467
mRNA
_5468
mRNA
_5469
mRNA
_5470
mRNA
_5471
13835
13836
13837
13838
13839
auxotrophy
Dropout Complete
-0.4
-0.3
+0.1
-0.4
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.1
-0.3
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
-0.2
-0.0
-0.5
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
+0.1
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.2
-0.5
+0.1
+0.1
auxotrophy
YNB Glucose
+0.2
-0.0
-0.5
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.3
+0.1
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.0
-0.3
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.1
+0.2
+0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.2
-0.6
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.1
-0.3
+0.3
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.2
-0.4
-0.1
+0.3
growth on ricinoleic acid
YNB Glucose
+0.4
+0.1
-0.4
-0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.3
-0.4
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
+0.4
+0.0
-0.2
growth on oleic acid
YNB Glucose
+0.2
-0.0
-0.3
+0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
+0.2
+0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.3
+0.3
+0.3
+0.0
growth on ypd
YPD
+0.1
+0.1
-0.3
+0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.2
-0.3
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.3
-0.1
+0.5
+0.1
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