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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13836 and 13837 are separated by 104 nucleotides
13837 and 13838 are separated by 220 nucleotides
13838 and 13839 are separated by 516 nucleotides
13839 and 13840 are separated by 381 nucleotides
mRNA_5468: 13836 - Hypothetical Protein, at 166,457 to 167,011
13836
mRNA_5469: 13837 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins retinal binding site.-PS00327,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 167,116 to 168,617
13837
mRNA_5470: 13838 - K00599 METTL6 methyltransferase-like protein 6, at 168,838 to 170,246
13838
mRNA_5471: 13839 - KOG4696 Uncharacterized conserved protein, at 170,763 to 172,785
13839
mRNA_5472: 13840 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 173,167 to 176,789
13840
Group
Condition
mRNA
_5468
mRNA
_5469
mRNA
_5470
mRNA
_5471
mRNA
_5472
13836
13837
13838
13839
13840
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.3
-0.5
-0.1
N.D.
auxotrophy
Dropout Complete
-0.3
+0.1
-0.4
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
-0.0
-0.5
N.D.
auxotrophy
YNB Glucose
-0.0
-0.5
-0.0
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.4
-0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.3
+0.1
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
-0.2
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.4
-0.2
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.6
+0.4
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.5
+0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.4
-0.1
+0.3
N.D.
growth on oleic acid
YNB Glucose
-0.0
-0.3
+0.4
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.1
+0.3
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
+0.3
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
+0.2
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
+0.2
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.3
+0.2
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.4
+0.0
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.3
+0.3
+0.0
N.D.
growth on ypd
YPD
+0.1
-0.3
+0.3
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.1
+0.5
+0.1
N.D.
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