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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13837 and 13838 are separated by 220 nucleotides
13838 and 13839 are separated by 516 nucleotides
13839 and 13840 are separated by 381 nucleotides
13840 and 13841 are separated by 137 nucleotides
mRNA_5469: 13837 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins retinal binding site.-PS00327,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 167,116 to 168,617
13837
mRNA_5470: 13838 - K00599 METTL6 methyltransferase-like protein 6, at 168,838 to 170,246
13838
mRNA_5471: 13839 - KOG4696 Uncharacterized conserved protein, at 170,763 to 172,785
13839
mRNA_5472: 13840 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 173,167 to 176,789
13840
mRNA_5473: 13841 - KOG2226 Proteins containing regions of low-complexity, at 176,927 to 180,681
13841
Group
Condition
mRNA
_5469
mRNA
_5470
mRNA
_5471
mRNA
_5472
mRNA
_5473
13837
13838
13839
13840
13841
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.2
+0.1
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.5
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.1
+0.3
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.1
-0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
-0.0
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
-0.5
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
-0.0
N.D.
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.3
+0.0
N.D.
-1.0
auxotrophy
Dropout Complete
+0.1
-0.4
-0.3
N.D.
+0.2
auxotrophy
YNB Glucose
-0.5
-0.0
-0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.3
-0.0
N.D.
-0.6
growth on oleic acid
YNB Glucose
-0.3
+0.4
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.1
+0.1
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.3
+0.3
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.2
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
-0.3
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
+0.4
+0.2
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.0
-0.2
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.5
+0.1
N.D.
-0.0
growth on ypd
YPD
-0.3
+0.3
+0.2
N.D.
+0.4
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