Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13837 and 13838 are separated by 220 nucleotides13838 and 13839 are separated by 516 nucleotides13839 and 13840 are separated by 381 nucleotides13840 and 13841 are separated by 137 nucleotides mRNA_5469: 13837 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins retinal binding site.-PS00327,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 167,116 to 168,617 13837 mRNA_5470: 13838 - K00599 METTL6 methyltransferase-like protein 6, at 168,838 to 170,246 13838 mRNA_5471: 13839 - KOG4696 Uncharacterized conserved protein, at 170,763 to 172,785 13839 mRNA_5472: 13840 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 173,167 to 176,789 13840 mRNA_5473: 13841 - KOG2226 Proteins containing regions of low-complexity, at 176,927 to 180,681 13841
Group Condition mRNA_5469 mRNA_5470 mRNA_5471 mRNA_5472 mRNA_5473
13837 13838 13839 13840 13841
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 -0.2 +0.1 N.D. -0.3
auxotrophy YNB Glucose 75mM Methionine -0.3 -0.5 -0.1 N.D. +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 -0.1 +0.3 N.D. -0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 +0.1 -0.2 N.D. -0.2
growth on ricinoleic acid YNB Glucose -0.4 -0.1 -0.0 N.D. -0.0
auxotrophy YNB Glucose 75mM Arginine -0.2 -0.0 -0.5 N.D. +0.3
growth on oleic acid YNB Oleic Acid +0.1 -0.2 -0.0 N.D. -0.4
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 +0.3 +0.0 N.D. -1.0
auxotrophy Dropout Complete +0.1 -0.4 -0.3 N.D. +0.2
auxotrophy YNB Glucose -0.5 -0.0 -0.1 N.D. +0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.3 -0.0 N.D. -0.6
growth on oleic acid YNB Glucose -0.3 +0.4 -0.1 N.D. -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.5 +0.1 +0.1 N.D. +0.3
ypd buoyancy 40 hrs Median Buoyancy +0.2 +0.2 -0.3 N.D. -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3 +0.3 +0.3 N.D. -0.3
facs on lipid accumulation Sorted High BODIPY Gate -0.3 +0.2 +0.1 N.D. +0.1
ypd buoyancy 40 hrs High Buoyancy +0.2 +0.2 -0.3 N.D. +0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.6 +0.4 +0.2 N.D. +0.2
ypd buoyancy 40 hrs Low Buoyancy +0.4 +0.0 -0.2 N.D. +0.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 +0.5 +0.1 N.D. -0.0
growth on ypd YPD -0.3 +0.3 +0.2 N.D. +0.4
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