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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13841 and 13842 are separated by 278 nucleotides
13842 and 13843 are separated by 158 nucleotides
13843 and 13844 are separated by 438 nucleotides
13844 and 13845 are separated by 269 nucleotides
mRNA_5473: 13841 - KOG2226 Proteins containing regions of low-complexity, at 176,927 to 180,681
13841
mRNA_5474: 13842 - HMMPfam-Mitochondrial ATP synthase epsilon chain-PF04627,SUPERFAMILY--SSF48690, at 180,960 to 181,593
13842
mRNA_5475: 13843 - KOG0084 GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins, at 181,752 to 183,361
13843
mRNA_5476: 13844 - KOG4719 Nuclear pore complex protein, at 183,800 to 188,314
13844
mRNA_5477: 13845 - K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11, at 188,584 to 192,714
13845
Group
Condition
mRNA
_5473
mRNA
_5474
mRNA
_5475
mRNA
_5476
mRNA
_5477
13841
13842
13843
13844
13845
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
-0.4
-1.3
-0.9
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.3
-0.3
-2.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
-0.3
-0.7
-1.3
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
N.D.
+0.5
+0.0
-1.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
N.D.
-0.7
+0.3
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
+0.1
-1.0
-0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
N.D.
-0.3
+0.3
-1.0
auxotrophy
YNB Glucose
+0.2
N.D.
-0.2
-0.2
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-0.0
-1.7
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
-0.2
-0.2
-1.1
auxotrophy
Dropout Complete
+0.2
N.D.
-0.4
+0.0
-1.1
growth on ypd
YPD
+0.4
N.D.
-0.1
-0.7
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.3
+0.1
-0.4
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
-0.4
+0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
-0.1
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.1
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
-0.4
+0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
-0.5
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
-0.2
-0.0
+0.8
growth on oleic acid
YNB Oleic Acid
-0.4
N.D.
-0.3
+1.3
+0.1
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.0
+1.2
-0.1
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