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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13843 and 13844 are separated by 438 nucleotides
13844 and 13845 are separated by 269 nucleotides
13845 and 13846 are separated by 151 nucleotides
13846 and 13847 are separated by 396 nucleotides
mRNA_5475: 13843 - KOG0084 GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins, at 181,752 to 183,361
13843
mRNA_5476: 13844 - KOG4719 Nuclear pore complex protein, at 183,800 to 188,314
13844
mRNA_5477: 13845 - K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11, at 188,584 to 192,714
13845
mRNA_5478: 13846 - SUPERFAMILY--SSF81383, at 192,866 to 194,409
13846
mRNA_5479: 13847 - KOG3070 Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing, at 194,806 to 195,878
13847
Group
Condition
mRNA
_5475
mRNA
_5476
mRNA
_5477
mRNA
_5478
mRNA
_5479
13843
13844
13845
13846
13847
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.3
-2.3
-0.9
-0.4
auxotrophy
Dropout Complete
-0.4
+0.0
-1.1
-0.7
-1.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-1.3
-0.9
-0.2
-0.5
auxotrophy
YNB Glucose
-0.2
-0.2
-1.3
-0.7
-0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
-1.1
-0.6
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.7
-1.3
+0.5
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-1.0
-0.9
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.3
-1.0
-0.4
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-1.7
+0.3
-0.9
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.1
-0.4
-0.7
-0.7
growth on ypd
YPD
-0.1
-0.7
-0.8
+0.2
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
+0.3
-0.9
-0.2
-0.4
growth on ricinoleic acid
YNB Glucose
-0.4
+0.2
-0.3
+0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.2
+0.4
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.2
-0.4
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.0
-1.3
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
-0.0
+0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
-0.2
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.0
+0.8
-0.3
-0.4
growth on oleic acid
YNB Glucose
-0.0
+1.2
-0.1
+0.5
-0.1
growth on oleic acid
YNB Oleic Acid
-0.3
+1.3
+0.1
+0.2
+0.2
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