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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13845 and 13846 are separated by 151 nucleotides
13846 and 13847 are separated by 396 nucleotides
13847 and 13848 are separated by 2499 nucleotides
13848 and 13849 are separated by 467 nucleotides
mRNA_5477: 13845 - K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11, at 188,584 to 192,714
13845
mRNA_5478: 13846 - SUPERFAMILY--SSF81383, at 192,866 to 194,409
13846
mRNA_5479: 13847 - KOG3070 Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing, at 194,806 to 195,878
13847
mRNA_5480: 13848 - Hypothetical Protein, at 198,378 to 198,864
13848
mRNA_5481: 13849 - KOG2710 Rho GTPase-activating protein, at 199,332 to 200,672
13849
Group
Condition
mRNA
_5477
mRNA
_5478
mRNA
_5479
mRNA
_5480
mRNA
_5481
13845
13846
13847
13848
13849
auxotrophy
YNB Glucose 75mM Methionine
-2.3
-0.9
-0.4
+0.1
+0.3
auxotrophy
Dropout Complete
-1.1
-0.7
-1.4
-0.2
+0.2
auxotrophy
YNB Glucose
-1.3
-0.7
-0.8
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-1.1
-0.6
-1.0
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.0
-0.4
-0.8
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.7
-0.7
+0.4
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
+0.3
-0.1
+0.4
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-0.1
-0.6
+0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.2
-0.5
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
+0.5
-0.8
+0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.5
-0.3
-0.3
-0.2
growth on ypd
YPD
-0.8
+0.2
-0.7
+0.2
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-0.2
-0.4
+0.6
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.0
-0.1
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.9
+0.1
-0.1
+0.5
growth on ricinoleic acid
YNB Glucose
-0.3
+0.1
-0.4
+0.3
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
-0.3
+0.3
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
+0.2
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
-0.3
-0.4
+0.3
-0.1
growth on oleic acid
YNB Glucose
-0.1
+0.5
-0.1
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
+0.3
+0.3
+0.3
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