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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13847 and 13848 are separated by 2499 nucleotides
13848 and 13849 are separated by 467 nucleotides
13849 and 13850 are separated by 372 nucleotides
13850 and 13851 are separated by 619 nucleotides
mRNA_5479: 13847 - KOG3070 Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing, at 194,806 to 195,878
13847
mRNA_5480: 13848 - Hypothetical Protein, at 198,378 to 198,864
13848
mRNA_5481: 13849 - KOG2710 Rho GTPase-activating protein, at 199,332 to 200,672
13849
mRNA_5482: 13850 - Hypothetical Protein, at 201,045 to 202,061
13850
mRNA_5483: 13851 - KOG1339 Aspartyl protease, at 202,681 to 205,111
13851
Group
Condition
mRNA
_5479
mRNA
_5480
mRNA
_5481
mRNA
_5482
mRNA
_5483
13847
13848
13849
13850
13851
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.1
+0.3
-0.3
-3.7
auxotrophy
Dropout Complete
-1.4
-0.2
+0.2
+0.1
-1.4
auxotrophy
YNB Glucose 75mM Arginine
-1.0
+0.2
+0.0
-0.1
-1.3
auxotrophy
YNB Glucose
-0.8
-0.1
+0.1
+0.1
-1.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
+0.2
+0.2
-0.1
-1.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
+0.0
+0.4
+0.0
-1.3
growth on ricinoleic acid
YNB Glucose
-0.4
+0.3
+0.4
+0.1
-1.8
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.1
+0.3
+0.1
-1.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.6
+0.5
-0.2
-1.8
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.3
-0.0
-1.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
+0.5
-0.2
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.1
+0.5
-0.1
-1.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.4
-0.7
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
+0.1
+0.2
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.3
-0.2
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.3
-0.1
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
+0.4
-0.2
-0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.3
-0.0
+0.0
-0.0
growth on ypd
YPD
-0.7
+0.2
+0.4
+0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.3
+0.3
+0.1
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
-0.1
+0.2
+0.3
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