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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13849 and 13850 are separated by 372 nucleotides
13850 and 13851 are separated by 619 nucleotides
13851 and 13852 are separated by 387 nucleotides
13852 and 13853 are separated by 684 nucleotides
mRNA_5481: 13849 - KOG2710 Rho GTPase-activating protein, at 199,332 to 200,672
13849
mRNA_5482: 13850 - Hypothetical Protein, at 201,045 to 202,061
13850
mRNA_5483: 13851 - KOG1339 Aspartyl protease, at 202,681 to 205,111
13851
mRNA_5484: 13852 - K16612 HOOK1 protein HOOK1, at 205,499 to 209,113
13852
mRNA_5485: 13853 - K02896 RP-L24e, RPL24 large subunit ribosomal protein L24e, at 209,798 to 210,668
13853
Group
Condition
mRNA
_5481
mRNA
_5482
mRNA
_5483
mRNA
_5484
mRNA
_5485
13849
13850
13851
13852
13853
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.3
-3.7
-0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.2
-1.8
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
-1.3
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
+0.1
-1.8
+0.0
N.D.
auxotrophy
YNB Glucose
+0.1
+0.1
-1.3
-0.1
N.D.
auxotrophy
Dropout Complete
+0.2
+0.1
-1.4
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
-1.3
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
-1.4
-0.0
N.D.
growth on oleic acid
YNB Glucose
+0.3
-0.0
-1.3
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.0
-1.3
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.3
+0.1
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.1
-1.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
-0.2
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
-0.7
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.1
-0.6
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
+0.4
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
-0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.0
+0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
+0.3
+0.1
N.D.
growth on ypd
YPD
+0.4
+0.2
+0.3
-0.3
N.D.
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