Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
13851 and 13852 are separated by 387 nucleotides
13852 and 13853 are separated by 684 nucleotides
13853 and 13854 are separated by 388 nucleotides
13854 and 13855 are separated by 537 nucleotides
mRNA_5483: 13851 - KOG1339 Aspartyl protease, at 202,681 to 205,111
13851
mRNA_5484: 13852 - K16612 HOOK1 protein HOOK1, at 205,499 to 209,113
13852
mRNA_5485: 13853 - K02896 RP-L24e, RPL24 large subunit ribosomal protein L24e, at 209,798 to 210,668
13853
mRNA_5486: 13854 - K15695 RNF103, KF1 E3 ubiquitin-protein ligase RNF103, at 211,057 to 213,286
13854
mRNA_5487: 13855 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 213,824 to 214,622
13855
Group
Condition
mRNA
_5483
mRNA
_5484
mRNA
_5485
mRNA
_5486
mRNA
_5487
13851
13852
13853
13854
13855
growth on ricinoleic acid
YNB Ricinoleic Acid
-3.7
-0.3
N.D.
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.8
-0.2
N.D.
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-1.8
+0.0
N.D.
+0.0
-0.0
growth on oleic acid
YNB Glucose
-1.3
+0.1
N.D.
-0.0
-0.5
auxotrophy
YNB Glucose
-1.3
-0.1
N.D.
-0.3
+0.1
auxotrophy
Dropout Complete
-1.4
-0.2
N.D.
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-1.4
-0.0
N.D.
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
+0.1
N.D.
-0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
+0.1
N.D.
+0.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-1.3
+0.2
N.D.
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-1.3
+0.1
N.D.
-0.1
+0.0
growth on oleic acid
YNB Oleic Acid
-0.7
+0.1
N.D.
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
N.D.
-0.4
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
N.D.
-0.4
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.6
+0.0
N.D.
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.1
N.D.
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
N.D.
-0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.2
N.D.
+0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.1
N.D.
-0.2
+0.2
growth on ypd
YPD
+0.3
-0.3
N.D.
+0.2
+0.6
remove
mRNA_5483
plot
remove
mRNA_5484
plot
remove
mRNA_5485
remove
mRNA_5486
plot
remove
mRNA_5487
plot