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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13852 and 13853 are separated by 684 nucleotides
13853 and 13854 are separated by 388 nucleotides
13854 and 13855 are separated by 537 nucleotides
13855 and 13856 are separated by 261 nucleotides
mRNA_5484: 13852 - K16612 HOOK1 protein HOOK1, at 205,499 to 209,113
13852
mRNA_5485: 13853 - K02896 RP-L24e, RPL24 large subunit ribosomal protein L24e, at 209,798 to 210,668
13853
mRNA_5486: 13854 - K15695 RNF103, KF1 E3 ubiquitin-protein ligase RNF103, at 211,057 to 213,286
13854
mRNA_5487: 13855 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 213,824 to 214,622
13855
mRNA_5488: 13856 - K01078 E3.1.3.2 acid phosphatase, at 214,884 to 216,932
13856
Group
Condition
mRNA
_5484
mRNA
_5485
mRNA
_5486
mRNA
_5487
mRNA
_5488
13852
13853
13854
13855
13856
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.4
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
-0.4
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.1
-0.4
-0.5
auxotrophy
Dropout Complete
-0.2
N.D.
-0.2
-0.0
-0.1
auxotrophy
YNB Glucose
-0.1
N.D.
-0.3
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
+0.1
-0.5
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
+0.2
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.1
-0.4
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
-0.3
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.2
+0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.2
-0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-0.4
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.0
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
-0.1
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
-0.1
+0.1
+0.1
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.0
-0.5
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
+0.0
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.0
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.1
+0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
-0.3
+0.0
+0.3
growth on ypd
YPD
-0.3
N.D.
+0.2
+0.6
+0.5
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