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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13853 and 13854 are separated by 388 nucleotides
13854 and 13855 are separated by 537 nucleotides
13855 and 13856 are separated by 261 nucleotides
13856 and 13857 are separated by 454 nucleotides
mRNA_5485: 13853 - K02896 RP-L24e, RPL24 large subunit ribosomal protein L24e, at 209,798 to 210,668
13853
mRNA_5486: 13854 - K15695 RNF103, KF1 E3 ubiquitin-protein ligase RNF103, at 211,057 to 213,286
13854
mRNA_5487: 13855 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 213,824 to 214,622
13855
mRNA_5488: 13856 - K01078 E3.1.3.2 acid phosphatase, at 214,884 to 216,932
13856
mRNA_5489: 13857 - KOG1263 Multicopper oxidases, at 217,387 to 219,494
13857
Group
Condition
mRNA
_5485
mRNA
_5486
mRNA
_5487
mRNA
_5488
mRNA
_5489
13853
13854
13855
13856
13857
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
-0.5
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.4
-0.5
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.4
-0.5
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.4
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
-0.1
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
-0.1
+0.1
-0.0
auxotrophy
Dropout Complete
N.D.
-0.2
-0.0
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.0
-0.2
+0.1
-0.0
growth on oleic acid
YNB Glucose
N.D.
-0.0
-0.5
+0.5
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.4
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.2
-0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
-0.1
-0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
+0.0
+0.3
+0.0
auxotrophy
YNB Glucose
N.D.
-0.3
+0.1
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.1
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.0
+0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-0.5
+0.1
+0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.2
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
-0.0
+0.1
+0.2
growth on ypd
YPD
N.D.
+0.2
+0.6
+0.5
-0.1
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