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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13854 and 13855 are separated by 537 nucleotides
13855 and 13856 are separated by 261 nucleotides
13856 and 13857 are separated by 454 nucleotides
13857 and 13858 are separated by 119 nucleotides
mRNA_5486: 13854 - K15695 RNF103, KF1 E3 ubiquitin-protein ligase RNF103, at 211,057 to 213,286
13854
mRNA_5487: 13855 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 213,824 to 214,622
13855
mRNA_5488: 13856 - K01078 E3.1.3.2 acid phosphatase, at 214,884 to 216,932
13856
mRNA_5489: 13857 - KOG1263 Multicopper oxidases, at 217,387 to 219,494
13857
mRNA_5490: 13858 - Hypothetical Protein, at 219,614 to 220,900
13858
Group
Condition
mRNA
_5486
mRNA
_5487
mRNA
_5488
mRNA
_5489
mRNA
_5490
13854
13855
13856
13857
13858
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.5
+0.0
+0.2
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.5
-0.1
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.4
-0.5
+0.4
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
-0.2
+0.0
-0.5
growth on oleic acid
YNB Oleic Acid
-0.1
-0.4
+0.2
-0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.1
+0.2
-0.1
+0.1
auxotrophy
Dropout Complete
-0.2
-0.0
-0.1
+0.0
-0.0
growth on oleic acid
YNB Glucose
-0.0
-0.5
+0.5
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
+0.1
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.5
+0.1
+0.5
-0.0
growth on ricinoleic acid
YNB Glucose
+0.0
-0.0
+0.1
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.2
+0.1
-0.0
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.0
+0.2
+0.1
+0.1
auxotrophy
YNB Glucose
-0.3
+0.1
+0.1
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
+0.1
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
-0.0
+0.0
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.0
+0.3
+0.0
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
+0.2
+0.2
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
-0.1
+0.1
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.4
-0.1
+0.3
+0.7
growth on ypd
YPD
+0.2
+0.6
+0.5
-0.1
-0.1
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