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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13864 and 13865 are separated by 2433 nucleotides
13865 and 13866 are separated by 1518 nucleotides
13866 and 13867 are separated by 379 nucleotides
13867 and 13868 are separated by 382 nucleotides
mRNA_5496: 13864 - HMMPfam-HSF-type DNA-binding-PF00447,SUPERFAMILY--SSF46785, at 230,916 to 233,624
13864
mRNA_5497: 13865 - KOG3872 FOG FHA domain, at 236,058 to 237,247
13865
mRNA_5498: 13866 - Hypothetical Protein, at 238,766 to 240,187
13866
mRNA_5499: 13867 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 240,567 to 242,106
13867
mRNA_5500: 13868 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,ProSiteProfiles-MATH/TRAF domain profile.-PS50144,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695, at 242,489 to 245,110
13868
Group
Condition
mRNA
_5496
mRNA
_5497
mRNA
_5498
mRNA
_5499
mRNA
_5500
13864
13865
13866
13867
13868
auxotrophy
YNB Glucose
-0.6
-0.5
-0.2
-0.5
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.6
-0.2
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.4
-0.1
-0.6
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.2
+0.1
-0.5
+0.2
auxotrophy
Dropout Complete
+0.3
-0.5
-0.3
-0.5
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.4
-0.1
-0.1
+0.2
growth on ypd
YPD
-0.7
+0.3
+0.1
-0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
-0.2
-0.3
-0.7
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.9
-0.1
-0.4
-0.6
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.2
+0.2
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.5
-0.1
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.5
-0.0
+0.2
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.8
-0.3
-0.0
+0.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.6
+0.2
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.3
-0.0
+0.6
-0.2
growth on oleic acid
YNB Oleic Acid
+1.3
-0.2
+0.0
-0.2
+0.1
growth on oleic acid
YNB Glucose
+1.4
+0.1
-0.1
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.2
+0.1
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.4
-0.1
+0.8
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.0
+0.3
+0.2
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.1
+0.0
+0.2
+0.7
-0.4
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