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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13865 and 13866 are separated by 1518 nucleotides
13866 and 13867 are separated by 379 nucleotides
13867 and 13868 are separated by 382 nucleotides
13868 and 13869 are separated by 271 nucleotides
mRNA_5497: 13865 - KOG3872 FOG FHA domain, at 236,058 to 237,247
13865
mRNA_5498: 13866 - Hypothetical Protein, at 238,766 to 240,187
13866
mRNA_5499: 13867 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 240,567 to 242,106
13867
mRNA_5500: 13868 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,ProSiteProfiles-MATH/TRAF domain profile.-PS50144,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695, at 242,489 to 245,110
13868
mRNA_5501: 13869 - Hypothetical Protein, at 245,382 to 247,759
13869
Group
Condition
mRNA
_5497
mRNA
_5498
mRNA
_5499
mRNA
_5500
mRNA
_5501
13865
13866
13867
13868
13869
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.4
-0.6
-0.1
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.3
-0.7
+0.1
-0.3
growth on ricinoleic acid
YNB Glucose
-0.6
-0.2
-0.2
-0.0
-0.3
auxotrophy
YNB Glucose
-0.5
-0.2
-0.5
+0.1
-0.2
auxotrophy
Dropout Complete
-0.5
-0.3
-0.5
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.1
-0.6
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.1
-0.1
+0.2
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
+0.0
-0.2
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.1
+0.1
+0.3
-0.1
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.5
+0.2
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.0
+0.0
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.0
+0.2
+0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.2
+0.1
-0.2
+0.1
growth on ypd
YPD
+0.3
+0.1
-0.3
+0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
+0.2
+0.2
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.2
-0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.0
+0.6
-0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.1
-0.5
+0.2
+1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
+0.5
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.2
+0.7
-0.4
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.1
+0.8
+0.1
+0.5
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