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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13867 and 13868 are separated by 382 nucleotides
13868 and 13869 are separated by 271 nucleotides
13869 and 13870 are separated by 152 nucleotides
13870 and 13871 are separated by 1005 nucleotides
mRNA_5499: 13867 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 240,567 to 242,106
13867
mRNA_5500: 13868 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,ProSiteProfiles-MATH/TRAF domain profile.-PS50144,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695, at 242,489 to 245,110
13868
mRNA_5501: 13869 - Hypothetical Protein, at 245,382 to 247,759
13869
mRNA_5502: 13870 - Hypothetical Protein, at 247,912 to 250,557
13870
mRNA_5503: 13871 - HMMPfam-Chitin synthase III catalytic subunit-PF12271, at 251,563 to 253,057
13871
Group
Condition
mRNA
_5499
mRNA
_5500
mRNA
_5501
mRNA
_5502
mRNA
_5503
13867
13868
13869
13870
13871
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.1
-0.5
-0.1
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
-0.1
-0.1
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.2
+0.1
+0.2
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.2
+0.3
-0.3
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
+0.1
-0.3
+0.3
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.3
+0.1
-0.2
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.2
+1.0
-0.0
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
-0.2
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.4
+0.1
-0.0
-0.8
growth on ypd
YPD
-0.3
+0.1
+0.3
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.0
-0.3
+0.1
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.6
+0.1
-0.1
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-0.4
+0.4
-0.1
-0.4
auxotrophy
Dropout Complete
-0.5
+0.2
-0.1
+0.0
+0.5
auxotrophy
YNB Glucose
-0.5
+0.1
-0.2
+0.1
+0.9
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
-0.2
-0.1
+0.7
growth on oleic acid
YNB Glucose
-0.5
+0.2
+0.4
+0.0
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
+0.1
+0.5
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.1
+0.4
+0.2
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
-0.1
+0.5
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
+0.2
+0.4
+0.5
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