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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13868 and 13869 are separated by 271 nucleotides
13869 and 13870 are separated by 152 nucleotides
13870 and 13871 are separated by 1005 nucleotides
13871 and 13872 are separated by 454 nucleotides
mRNA_5500: 13868 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,ProSiteProfiles-MATH/TRAF domain profile.-PS50144,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695, at 242,489 to 245,110
13868
mRNA_5501: 13869 - Hypothetical Protein, at 245,382 to 247,759
13869
mRNA_5502: 13870 - Hypothetical Protein, at 247,912 to 250,557
13870
mRNA_5503: 13871 - HMMPfam-Chitin synthase III catalytic subunit-PF12271, at 251,563 to 253,057
13871
mRNA_5504: 13872 - KOG4034 Uncharacterized conserved protein NOF (Neighbor of FAU), at 253,512 to 254,101
13872
Group
Condition
mRNA
_5500
mRNA
_5501
mRNA
_5502
mRNA
_5503
mRNA
_5504
13868
13869
13870
13871
13872
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.1
-0.1
-1.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.3
-0.3
-0.6
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
+0.2
-0.8
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.4
-0.1
-0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.5
-0.1
+0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.2
-0.0
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.1
-0.0
-0.8
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
-0.2
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.5
-0.5
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
-0.3
+0.1
+0.5
N.D.
growth on ypd
YPD
+0.1
+0.3
-0.0
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+1.0
-0.0
-0.8
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.4
+0.2
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.3
+0.3
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.2
-0.1
+0.7
N.D.
auxotrophy
Dropout Complete
+0.2
-0.1
+0.0
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
+0.1
+0.5
N.D.
auxotrophy
YNB Glucose
+0.1
-0.2
+0.1
+0.9
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.4
+0.0
+0.5
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+0.5
+0.7
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.2
+0.4
+0.5
N.D.
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