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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13869 and 13870 are separated by 152 nucleotides
13870 and 13871 are separated by 1005 nucleotides
13871 and 13872 are separated by 454 nucleotides
13872 and 13873 are separated by 355 nucleotides
mRNA_5501: 13869 - Hypothetical Protein, at 245,382 to 247,759
13869
mRNA_5502: 13870 - Hypothetical Protein, at 247,912 to 250,557
13870
mRNA_5503: 13871 - HMMPfam-Chitin synthase III catalytic subunit-PF12271, at 251,563 to 253,057
13871
mRNA_5504: 13872 - KOG4034 Uncharacterized conserved protein NOF (Neighbor of FAU), at 253,512 to 254,101
13872
mRNA_5505: 13873 - KOG0297 TNF receptor-associated factor, at 254,457 to 255,755
13873
Group
Condition
mRNA
_5501
mRNA
_5502
mRNA
_5503
mRNA
_5504
mRNA
_5505
13869
13870
13871
13872
13873
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-1.0
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
-0.4
N.D.
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.1
+0.4
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
-0.8
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.0
+0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.3
-0.6
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.8
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.5
+0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.1
-0.4
N.D.
+0.0
growth on ypd
YPD
+0.3
-0.0
+0.1
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.4
+0.5
N.D.
-0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
+0.7
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
-0.0
-0.8
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.2
-0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.3
+0.5
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
+0.1
+0.5
N.D.
+0.0
auxotrophy
Dropout Complete
-0.1
+0.0
+0.5
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
+0.5
N.D.
-0.0
auxotrophy
YNB Glucose
-0.2
+0.1
+0.9
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.4
+0.0
+0.5
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.5
+0.7
N.D.
-0.1
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