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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13871 and 13872 are separated by 454 nucleotides
13872 and 13873 are separated by 355 nucleotides
13873 and 13874 are separated by 1562 nucleotides
13874 and 13875 are separated by 98 nucleotides
mRNA_5503: 13871 - HMMPfam-Chitin synthase III catalytic subunit-PF12271, at 251,563 to 253,057
13871
mRNA_5504: 13872 - KOG4034 Uncharacterized conserved protein NOF (Neighbor of FAU), at 253,512 to 254,101
13872
mRNA_5505: 13873 - KOG0297 TNF receptor-associated factor, at 254,457 to 255,755
13873
mRNA_5506: 13874 - KOG2504 Monocarboxylate transporter, at 257,318 to 259,586
13874
mRNA_5507: 13875 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 259,685 to 261,151
13875
Group
Condition
mRNA
_5503
mRNA
_5504
mRNA
_5505
mRNA
_5506
mRNA
_5507
13871
13872
13873
13874
13875
ypd buoyancy
40 hrs Median Buoyancy
-1.0
N.D.
-0.0
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
N.D.
+0.2
+0.0
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.4
N.D.
-0.4
+0.1
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.8
N.D.
+0.1
+0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
N.D.
-0.1
+0.0
-1.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
N.D.
-0.4
+0.5
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.3
-0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
N.D.
+0.1
-0.5
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
N.D.
-0.8
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.5
N.D.
-0.0
-0.1
-0.4
auxotrophy
Dropout Complete
+0.5
N.D.
+0.1
-0.0
-0.4
growth on ricinoleic acid
YNB Glucose
+0.5
N.D.
+0.0
+0.1
-0.4
growth on oleic acid
YNB Glucose
+0.5
N.D.
-0.1
+0.3
-0.4
growth on oleic acid
YNB Oleic Acid
+0.7
N.D.
-0.1
+0.3
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.7
N.D.
-0.2
+0.2
-0.1
auxotrophy
YNB Glucose
+0.9
N.D.
-0.1
+0.0
+0.3
growth on ypd
YPD
+0.1
N.D.
-0.0
+0.3
+1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
-0.1
-0.3
+2.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
N.D.
+0.0
+0.1
+1.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
N.D.
+0.3
+0.1
+2.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.2
+0.4
+2.2
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