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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13873 and 13874 are separated by 1562 nucleotides
13874 and 13875 are separated by 98 nucleotides
13875 and 13876 are separated by 1289 nucleotides
13876 and 13877 are separated by 456 nucleotides
mRNA_5505: 13873 - KOG0297 TNF receptor-associated factor, at 254,457 to 255,755
13873
mRNA_5506: 13874 - KOG2504 Monocarboxylate transporter, at 257,318 to 259,586
13874
mRNA_5507: 13875 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 259,685 to 261,151
13875
mRNA_5508: 13876 - KOG0297 TNF receptor-associated factor, at 262,441 to 263,588
13876
mRNA_5509: 13877 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 264,045 to 264,907
13877
Group
Condition
mRNA
_5505
mRNA
_5506
mRNA
_5507
mRNA
_5508
mRNA
_5509
13873
13874
13875
13876
13877
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.0
-1.4
+0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.0
-0.7
+0.2
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.1
+0.0
+0.4
-0.9
auxotrophy
Dropout Complete
+0.1
-0.0
-0.4
+0.1
-0.4
growth on oleic acid
YNB Oleic Acid
-0.1
+0.3
-0.5
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.1
-0.4
+0.3
-0.2
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
-0.4
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
+0.3
+0.1
+0.4
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.1
-0.4
-0.2
+0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.2
-0.1
+0.2
-0.0
growth on oleic acid
YNB Glucose
-0.1
+0.3
-0.4
+0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.5
-1.0
+0.5
+0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-0.3
+0.0
+0.9
auxotrophy
YNB Glucose
-0.1
+0.0
+0.3
+0.4
-0.2
growth on ypd
YPD
-0.0
+0.3
+1.1
+0.2
-0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.4
+0.1
+1.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.5
+0.8
+0.3
+1.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
+1.9
-0.0
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.3
+2.1
+0.2
+1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.4
+2.2
+0.1
+1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.1
+2.5
+0.2
+0.8
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