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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13876 and 13877 are separated by 456 nucleotides
13877 and 13878 are separated by 735 nucleotides
13878 and 13879 are separated by 616 nucleotides
13879 and 13880 are separated by 456 nucleotides
mRNA_5508: 13876 - KOG0297 TNF receptor-associated factor, at 262,441 to 263,588
13876
mRNA_5509: 13877 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 264,045 to 264,907
13877
mRNA_5510: 13878 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 265,643 to 266,758
13878
mRNA_5511: 13879 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 267,375 to 268,513
13879
mRNA_5512: 13880 - HMMPfam-PB1 domain-PF00564,HMMPfam-CBS domain-PF00571,ProSiteProfiles-CBS domain profile.-PS51371,SMART-Domain in cystathionine beta-synthase and other proteins.-SM00116,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF54631, at 268,970 to 271,571
13880
Group
Condition
mRNA
_5508
mRNA
_5509
mRNA
_5510
mRNA
_5511
mRNA
_5512
13876
13877
13878
13879
13880
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-1.1
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.9
-0.0
+0.0
N.D.
auxotrophy
Dropout Complete
+0.1
-0.4
+0.3
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.8
-0.4
-0.1
N.D.
auxotrophy
YNB Glucose
+0.4
-0.2
+0.3
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
+0.6
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
+0.3
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.2
-0.0
+0.2
N.D.
growth on ypd
YPD
+0.2
-0.6
+0.5
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.9
-0.4
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.2
+0.4
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
+0.8
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.8
+0.2
-0.5
N.D.
growth on oleic acid
YNB Glucose
+0.4
-0.1
+0.6
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+1.2
-0.5
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.9
+0.5
-0.5
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.2
+1.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+1.0
+0.5
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+1.2
+0.3
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+1.3
-0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.6
+0.9
-0.2
N.D.
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