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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13881 and 13882 are separated by 122 nucleotides
13882 and 13883 are separated by 377 nucleotides
13883 and 13884 are separated by 155 nucleotides
13884 and 13885 are separated by 2864 nucleotides
mRNA_5513: 13881 - KOG4178 Soluble epoxide hydrolase, at 272,103 to 273,154
13881
mRNA_5514: 13882 - K03031 PSMD8, RPN12 26S proteasome regulatory subunit N12, at 273,277 to 274,802
13882
mRNA_5515: 13883 - K02738 PSMB6 20S proteasome subunit beta 1, at 275,180 to 276,108
13883
mRNA_5516: 13884 - Hypothetical Protein, at 276,264 to 277,474
13884
mRNA_5517: 13885 - PRINTS-Proline rich extensin signature-PR01217, at 280,339 to 282,741
13885
Group
Condition
mRNA
_5513
mRNA
_5514
mRNA
_5515
mRNA
_5516
mRNA
_5517
13881
13882
13883
13884
13885
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
N.D.
-0.9
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
N.D.
-0.7
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
N.D.
+0.3
-0.4
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
N.D.
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
N.D.
-0.7
+0.2
auxotrophy
Dropout Complete
+0.2
N.D.
N.D.
-0.4
-0.0
growth on oleic acid
YNB Glucose
-0.0
N.D.
N.D.
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
N.D.
N.D.
+0.2
+0.1
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
N.D.
-0.0
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
N.D.
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
N.D.
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
N.D.
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
N.D.
-0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
N.D.
+0.0
+0.1
growth on ypd
YPD
+0.2
N.D.
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose
-0.0
N.D.
N.D.
+0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
N.D.
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
N.D.
N.D.
-0.3
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
N.D.
N.D.
+0.7
+0.0
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