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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13886 and 13887 are separated by 666 nucleotides
13887 and 13888 are separated by 464 nucleotides
13888 and 13889 are separated by 482 nucleotides
13889 and 13890 are separated by 489 nucleotides
mRNA_5518: 13886 - SUPERFAMILY--SSF49599, at 287,492 to 288,002
13886
mRNA_5519: 13887 - HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 288,669 to 289,832
13887
mRNA_5520: 13888 - KOG0297 TNF receptor-associated factor, at 290,297 to 291,417
13888
mRNA_5521: 13889 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 291,900 to 293,030
13889
mRNA_5522: 13890 - ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 293,520 to 294,673
13890
Group
Condition
mRNA
_5518
mRNA
_5519
mRNA
_5520
mRNA
_5521
mRNA
_5522
13886
13887
13888
13889
13890
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.4
-0.3
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.2
-0.1
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
-0.1
+0.3
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.5
-0.3
+0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
-0.1
-0.1
-0.0
growth on oleic acid
YNB Glucose
+0.3
-0.1
-0.1
-0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.2
+0.1
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
-0.2
+0.4
+0.1
growth on oleic acid
YNB Oleic Acid
+0.6
-0.1
-0.2
-0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.7
-0.0
-0.1
-0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.3
+0.1
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
+0.0
+0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.1
+0.1
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
-0.2
+0.1
+0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.9
-0.1
+0.3
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.1
+0.4
+0.0
+0.0
auxotrophy
Dropout Complete
+0.6
+0.0
+0.3
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.2
+0.5
-0.0
+0.4
growth on ypd
YPD
+0.2
+0.8
+0.0
+0.2
-0.1
auxotrophy
YNB Glucose
+0.8
-0.1
+0.2
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
+0.4
+0.4
-0.1
+0.2
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