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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13889 and 13890 are separated by 489 nucleotides
13890 and 13891 are separated by 484 nucleotides
13891 and 13892 are separated by 844 nucleotides
13892 and 13893 are separated by 852 nucleotides
mRNA_5521: 13889 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 291,900 to 293,030
13889
mRNA_5522: 13890 - ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 293,520 to 294,673
13890
mRNA_5523: 13891 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850, at 295,158 to 296,227
13891
mRNA_5524: 13892 - KOG3002 Zn finger protein, at 297,072 to 298,317
13892
mRNA_5525: 13893 - HMMPfam-Xyloglucan fucosyltransferase-PF03254, at 299,170 to 301,469
13893
Group
Condition
mRNA
_5521
mRNA
_5522
mRNA
_5523
mRNA
_5524
mRNA
_5525
13889
13890
13891
13892
13893
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
-0.5
-0.6
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
-0.4
-0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
+0.0
-0.5
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
-0.7
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
-0.3
-0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
-0.7
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.2
+0.2
-0.6
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.3
-0.0
-0.0
+0.2
growth on oleic acid
YNB Glucose
-0.1
-0.0
+0.3
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.0
-0.0
-0.1
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.0
+0.4
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.4
+0.3
-0.5
-0.1
auxotrophy
Dropout Complete
-0.1
+0.2
+0.3
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.1
+0.2
-0.4
-0.0
auxotrophy
YNB Glucose
+0.1
+0.3
+0.3
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.0
+0.2
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.3
-0.2
+0.1
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
-0.0
+0.2
+0.0
+0.1
growth on ypd
YPD
+0.2
-0.1
+0.1
+0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.1
+0.0
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.2
+0.5
-0.6
-0.1
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