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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13891 and 13892 are separated by 844 nucleotides
13892 and 13893 are separated by 852 nucleotides
13893 and 13894 are separated by 239 nucleotides
13894 and 13895 are separated by 420 nucleotides
mRNA_5523: 13891 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850, at 295,158 to 296,227
13891
mRNA_5524: 13892 - KOG3002 Zn finger protein, at 297,072 to 298,317
13892
mRNA_5525: 13893 - HMMPfam-Xyloglucan fucosyltransferase-PF03254, at 299,170 to 301,469
13893
mRNA_5526: 13894 - K00052 leuB 3-isopropylmalate dehydrogenase, at 301,709 to 303,276
13894
mRNA_5527: 13895 - K11883 NOB1 RNA-binding protein NOB1, at 303,697 to 305,493
13895
Group
Condition
mRNA
_5523
mRNA
_5524
mRNA
_5525
mRNA
_5526
mRNA
_5527
13891
13892
13893
13894
13895
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.6
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.2
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
+0.1
-0.0
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.0
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.6
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.5
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.2
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.5
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.4
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.5
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.1
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose
+0.3
-0.4
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.6
-0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.3
-0.2
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
-0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.3
-0.2
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.0
+0.2
N.D.
N.D.
growth on ypd
YPD
+0.1
+0.2
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.3
+0.2
N.D.
N.D.
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