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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13893 and 13894 are separated by 239 nucleotides
13894 and 13895 are separated by 420 nucleotides
13895 and 13896 are separated by 279 nucleotides
13896 and 13897 are separated by 244 nucleotides
mRNA_5525: 13893 - HMMPfam-Xyloglucan fucosyltransferase-PF03254, at 299,170 to 301,469
13893
mRNA_5526: 13894 - K00052 leuB 3-isopropylmalate dehydrogenase, at 301,709 to 303,276
13894
mRNA_5527: 13895 - K11883 NOB1 RNA-binding protein NOB1, at 303,697 to 305,493
13895
mRNA_5528: 13896 - HMMPfam-Protein of unknown function (DUF2416)-PF10315, at 305,773 to 306,425
13896
mRNA_5529: 13897 - K18045 SIW14, OCA3 tyrosine-protein phosphatase SIW14, at 306,670 to 307,631
13897
Group
Condition
mRNA
_5525
mRNA
_5526
mRNA
_5527
mRNA
_5528
mRNA
_5529
13893
13894
13895
13896
13897
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
N.D.
-0.6
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
N.D.
-0.2
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
N.D.
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
N.D.
-0.6
-0.1
growth on oleic acid
YNB Glucose
-0.1
N.D.
N.D.
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
N.D.
-0.5
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
N.D.
-0.4
+0.3
auxotrophy
Dropout Complete
+0.0
N.D.
N.D.
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
N.D.
-0.3
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
N.D.
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
N.D.
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
N.D.
+0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
N.D.
N.D.
-0.3
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
N.D.
+0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
N.D.
N.D.
+0.1
+0.3
auxotrophy
YNB Glucose
-0.0
N.D.
N.D.
-0.0
+0.4
growth on ypd
YPD
+0.0
N.D.
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
N.D.
+0.4
-0.2
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
N.D.
+0.1
+0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
N.D.
+0.6
+0.3
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