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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13896 and 13897 are separated by 244 nucleotides
13897 and 13898 are separated by 2026 nucleotides
13898 and 13899 are separated by 635 nucleotides
13899 and 13900 are separated by 36 nucleotides
mRNA_5528: 13896 - HMMPfam-Protein of unknown function (DUF2416)-PF10315, at 305,773 to 306,425
13896
mRNA_5529: 13897 - K18045 SIW14, OCA3 tyrosine-protein phosphatase SIW14, at 306,670 to 307,631
13897
mRNA_5530: 13898 - K02949 RP-S11e, RPS11 small subunit ribosomal protein S11e, at 309,658 to 310,320
13898
mRNA_5531: 13899 - K03800 lplA, lplJ lipoate---protein ligase, at 310,956 to 312,571
13899
mRNA_5532: 13900 - K01519 ITPA inosine triphosphate pyrophosphatase, at 312,608 to 313,852
13900
Group
Condition
mRNA
_5528
mRNA
_5529
mRNA
_5530
mRNA
_5531
mRNA
_5532
13896
13897
13898
13899
13900
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.6
N.D.
N.D.
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.1
N.D.
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.6
-0.2
N.D.
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.2
N.D.
N.D.
-0.3
growth on oleic acid
YNB Glucose
-0.0
-0.2
N.D.
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.3
N.D.
N.D.
-0.1
auxotrophy
Dropout Complete
-0.2
+0.1
N.D.
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.3
N.D.
N.D.
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.3
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.3
N.D.
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.2
N.D.
N.D.
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.6
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.3
N.D.
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.5
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
N.D.
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.3
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose
-0.0
+0.4
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
N.D.
N.D.
+0.2
growth on ypd
YPD
+0.1
+0.2
N.D.
N.D.
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.3
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.7
N.D.
N.D.
+0.4
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