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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13898 and 13899 are separated by 635 nucleotides
13899 and 13900 are separated by 36 nucleotides
13900 and 13901 are separated by 172 nucleotides
13901 and 13902 are separated by 197 nucleotides
mRNA_5530: 13898 - K02949 RP-S11e, RPS11 small subunit ribosomal protein S11e, at 309,658 to 310,320
13898
mRNA_5531: 13899 - K03800 lplA, lplJ lipoate---protein ligase, at 310,956 to 312,571
13899
mRNA_5532: 13900 - K01519 ITPA inosine triphosphate pyrophosphatase, at 312,608 to 313,852
13900
mRNA_5533: 13901 - Hypothetical Protein, at 314,025 to 315,738
13901
mRNA_5534: 13902 - K18798 AFG1, LACE1 peroxisome-assembly ATPase, at 315,936 to 317,983
13902
Group
Condition
mRNA
_5530
mRNA
_5531
mRNA
_5532
mRNA
_5533
mRNA
_5534
13898
13899
13900
13901
13902
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.4
-1.2
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.0
-0.5
-1.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.1
-0.6
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
-0.8
+0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.3
-0.4
-0.1
growth on ypd
YPD
N.D.
N.D.
+0.6
-0.5
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.1
+0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
-0.5
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.3
+0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.0
-0.2
+0.2
auxotrophy
Dropout Complete
N.D.
N.D.
-0.2
-0.2
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.1
+0.9
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
+0.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.2
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.1
-0.1
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.4
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
-0.0
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.4
+0.5
+0.6
auxotrophy
YNB Glucose
N.D.
N.D.
+0.1
+0.3
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.0
+0.7
+0.7
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